PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00731.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 211aa    MW: 23320.9 Da    PI: 9.8231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00731.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-192171155
                      AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++a +Aa+a++aa+++l+g
  Rsa1.0_00731.1_g00009.1 21 TRFRGVRKRP-WGRYAAEIRDpFK----KARVWLGTFDSAVDAARAYDAAARNLRG 71
                             589*******.**********662....5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-122171IPR001471AP2/ERF domain
CDDcd000186.89E-192181No hitNo description
SMARTSM003801.1E-352285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-302279IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-212280IPR016177DNA-binding domain
PROSITE profilePS5103222.6552279IPR001471AP2/ERF domain
PRINTSPR003672.7E-92334IPR001471AP2/ERF domain
PRINTSPR003672.7E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRRGRVSTPV IANHNASIKE TRFRGVRKRP WGRYAAEIRD PFKKARVWLG TFDSAVDAAR  60
AYDAAARNLR GPKAKTNFPI DSSPPSHQQN HNQIDPFMDH RLYAGVSSRP TSSSMSSTVE  120
SSSGQRSSVA KPMSTTTTTA KRYPRTPPVV PEDCHSDCGS SSSVIDDDGE DDIASSTRRR  180
NPPFRFDLNF PPLDDVGLIN GVDDLCTDLR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-191980264ATERF1
3gcc_A2e-191980264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589873.11e-105PREDICTED: ethylene-responsive transcription factor 3
SwissprotO803392e-73ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A078HJT81e-105A0A078HJT8_BRANA; BnaC06g03860D protein
TrEMBLA0A0D3CPT71e-105A0A0D3CPT7_BRAOL; Uncharacterized protein
STRINGBra018864.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-57ethylene responsive element binding factor 3